STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icaAPoly-beta-1,6-N-acetyl-D-glucosamine synthase. (465 aa)    
Predicted Functional Partners:
xynD
Bifunctional xylanase/deacetylase precursor.
 
 0.985
CDQ17836.1
Bifunctional xylanase/deacetylase precursor.
 
 0.970
CDQ19507.1
Tetratricopeptide repeat protein.
  
 0.968
pdaA_4
Putative polysaccharide deacetylase PdaA precursor.
 
 0.956
yrrB
TPR repeat-containing protein YrrB.
  
 0.953
pdaA_1
Putative polysaccharide deacetylase PdaA precursor.
 
 0.948
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
  
 
 0.754
CDQ20933.1
Bifunctional xylanase/deacetylase precursor.
 
 0.750
CDQ18697.1
Bifunctional xylanase/deacetylase precursor.
 
 0.741
pdaA_5
Putative polysaccharide deacetylase PdaA precursor.
 
 0.709
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.