STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerBA_3Spore germination protein B1. (190 aa)    
Predicted Functional Partners:
gerBA_4
Spore germination protein B1.
     0.994
gerAA_3
Spore germination protein A1.
 
     0.976
gerBC_2
Spore germination protein B3 precursor.
    0.947
yndE_2
Spore germination protein YndE.
 
    0.934
gerBC_3
Spore germination protein B3 precursor.
    0.779
gerBC_1
Spore germination protein B3 precursor.
 
    0.775
CDQ19437.1
Stage V sporulation protein AC.
  
    0.774
CDQ20798.1
Hypothetical protein.
       0.773
CDQ20802.1
Hypothetical protein.
       0.773
spoIVB
SpoIVB peptidase precursor.
  
     0.772
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.