STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerAA_3Spore germination protein A1. (298 aa)    
Predicted Functional Partners:
gerBA_3
Spore germination protein B1.
 
     0.976
gerAC
Spore germination protein A3 precursor.
 
    0.850
gerBB_2
Spore germination protein B2.
 
    0.819
spoVAD
Stage V sporulation protein AD.
  
    0.779
CDQ19437.1
Stage V sporulation protein AC.
  
    0.776
spoIVB
SpoIVB peptidase precursor.
  
     0.773
CDQ19439.1
Stage V sporulation protein AE.
  
    0.773
gpr
Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.772
spoIVA
Stage IV sporulation protein A.
  
     0.770
spoVT
Stage V sporulation protein T.
  
     0.770
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.