STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pucR_3Purine catabolism regulatory protein. (528 aa)    
Predicted Functional Partners:
tpa
Taurine--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.716
CDQ20968.1
D-hydantoinase.
 
   
 0.542
pucI
Allantoin transport protein.
 
   
 0.535
sdpR
Transcriptional repressor SdpR.
  
    0.520
CDQ20964.1
Hypothetical protein; Activator of Hsp90 ATPase homolog 1-like protein.
       0.518
dapE_3
Putative succinyl-diaminopimelate desuccinylase.
  
     0.469
CDQ19030.1
Hypothetical protein.
  
     0.429
amaB
N-carbamoyl-L-amino acid hydrolase.
 
   
 0.414
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.