STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
gltDGlutamate synthase [NADPH] small chain. (469 aa)    
Predicted Functional Partners:
gltB_1
Ferredoxin-dependent glutamate synthase 1.
 0.999
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
 0.999
pyrK
Dihydroorotate oxidase B, electron transfer subunit.
 
 0.990
pyrD
Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
 0.977
CDQ20968.1
D-hydantoinase.
 
 
  0.976
gltA
Glutamate synthase [NADPH] large chain.
  
 0.959
CDQ19999.1
Putative formate dehydrogenase.
   
 0.936
nasC
Assimilatory nitrate reductase catalytic subunit.
   
 0.935
CDQ20971.1
N-carbamoyl-D-amino acid hydrolase.
 
  0.926
CDQ18204.1
Na(+)-translocating NADH-quinone reductase subunit F.
    
 0.871
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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