STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Int-Tn_2Integrase. (393 aa)    
Predicted Functional Partners:
rghR
RapGH repressor.
  
    0.751
CDQ19204.1
DNA utilization protein GntX.
   
    0.526
CDQ20993.1
Hypothetical protein.
       0.497
tyrC
Arogenate dehydrogenase.
  
    0.479
whiA
Sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
   
    0.470
CDQ20473.1
Hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.470
CDQ20990.1
DNA binding domain, excisionase family.
     
 0.469
CDQ20992.1
Hypothetical protein.
       0.454
CDQ20991.1
Hypothetical protein.
       0.448
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.