STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Int-Tn_2Integrase. (393 aa)    
Predicted Functional Partners:
rghR
RapGH repressor.
  
    0.760
CDQ19204.1
DNA utilization protein GntX.
   
    0.526
CDQ20993.1
Hypothetical protein.
       0.497
CDQ20990.1
DNA binding domain, excisionase family.
     
 0.470
tyrC
Arogenate dehydrogenase.
  
    0.456
CDQ20992.1
Hypothetical protein.
       0.454
CDQ20991.1
Hypothetical protein.
       0.448
whiA
Sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
   
    0.445
CDQ20473.1
Hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.445
CDQ20988.1
Hypothetical protein; Phage/plasmid primase, P4 family, C-terminal domain.
     
 0.433
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.