STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CDQ20997.12'-5' RNA ligase; Belongs to the 2H phosphoesterase superfamily. YjcG family. (171 aa)    
Predicted Functional Partners:
CDQ20996.1
Enterobactin/ferric enterobactin esterase.
 
  
 0.971
yjcF
Putative N-acetyltransferase YjcF.
  
    0.922
ylbP
Putative N-acetyltransferase YlbP.
  
   
 0.739
CDQ21297.1
Hypothetical protein.
  
     0.735
CDQ19965.1
Hypothetical protein.
  
     0.655
CDQ19884.1
Hypothetical protein.
  
     0.654
CDQ20433.1
Bacterial Ig-like domain (group 1).
  
     0.638
CDQ21290.1
Hypothetical protein.
  
     0.608
ligT
2'-5'-RNA ligase.
      
 0.601
caaD
Cytochrome c oxidase subunit 4B.
  
     0.592
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.