STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yjcASporulation protein YjcA. (119 aa)    
Predicted Functional Partners:
CDQ21002.1
Hypothetical protein.
       0.773
CDQ19885.1
Sporulation lipoprotein, YhcN/YlaJ family.
  
     0.702
CDQ18018.1
Hypothetical protein.
  
     0.665
CDQ21004.1
Hypothetical protein.
       0.661
CDQ21001.1
Hypothetical protein.
       0.658
CDQ21000.1
Hydroxyacylglutathione hydrolase.
       0.605
CDQ20366.1
Ion channel.
  
     0.601
ytrI
Sporulation membrane protein YtrI.
  
     0.582
spoVID
Stage VI sporulation protein D.
  
     0.580
CDQ19763.1
Hypothetical protein.
  
     0.574
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.