STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yjbCPutative acetyltransferase YjbC. (196 aa)    
Predicted Functional Partners:
CDQ20460.1
Peroxiredoxin, Ohr subfamily.
 
     0.677
CDQ18255.1
SNARE associated Golgi protein.
  
     0.657
CDQ19904.1
Putative cell-wall binding lipoprotein.
  
     0.648
CDQ20585.1
Hypothetical protein.
  
     0.607
CDQ18150.1
Hypothetical protein; Belongs to the UPF0473 family.
  
     0.606
CDQ20597.1
Hypothetical protein.
  
     0.581
CDQ18108.1
Putative integral membrane protein.
  
     0.547
rpiA_1
Ribose-5-phosphate isomerase A.
  
    0.546
rpiA_2
Ribose-5-phosphate isomerase A.
  
    0.546
CDQ18831.1
ATP synthase I chain.
  
     0.532
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.