Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ21031.1Hypothetical protein. (253 aa)    
Predicted Functional Partners:
ytrI
Sporulation membrane protein YtrI.
  
     0.775
CDQ17910.1
Conserved membrane protein YqhR.
  
     0.774
CDQ18018.1
Hypothetical protein.
  
     0.774
yabQ
Spore protein YabQ.
  
     0.772
spoVID
Stage VI sporulation protein D.
  
     0.770
CDQ19489.1
Hypothetical protein.
  
     0.769
CDQ17921.1
Bacterial protein YqhG of unknown function.
  
     0.767
bofA
Bypass-of-forespore protein A.
  
     0.767
fliJ
Chemotaxis CheF protein.
  
     0.767
CDQ18193.1
Hypothetical protein.
  
     0.766
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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