STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cvfC_1Hypothetical protein; Conserved virulence factor C. (87 aa)    
Predicted Functional Partners:
frdB
Fumarate reductase iron-sulfur subunit.
  
 
 0.827
CDQ20597.1
Hypothetical protein.
  
     0.769
CDQ17911.1
Hypothetical protein.
  
     0.758
iscS_1
Cysteine desulfurase.
  
 0.738
iscS_2
Cysteine desulfurase.
  
 0.738
nifS
Putative cysteine desulfurase NifS.
  
 0.738
lipA
Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
  
 0.715
nifU
NifU-like protein.
  
 
 0.704
CDQ18201.1
Hypothetical protein.
  
    0.699
erpA
Iron-sulfur cluster insertion protein ErpA; Belongs to the HesB/IscA family.
  
 
 0.693
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.