STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yvoA_2HTH-type transcriptional repressor YvoA. (240 aa)    
Predicted Functional Partners:
nagA
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.904
CDQ21059.1
Putative protein containing SIS (Sugar ISomerase) phosphosugar binding domain protein.
 
     0.818
nagB
Glucosamine-6-phosphate deaminase 1.
  
  
 0.796
ptsG_2
EIICBA-Glc.
     
 0.734
lutR_3
L-lactate utilization operon repressor.
  
    0.677
lutR_1
L-lactate utilization operon repressor.
  
    0.645
lutR_4
L-lactate utilization operon repressor.
  
    0.596
asnO_2
Asparagine synthetase [glutamine-hydrolyzing] 3.
    
  0.575
puuR
HTH-type transcriptional regulator PuuR.
  
  
 0.561
lutR_2
L-lactate utilization operon repressor.
  
    0.560
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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