Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ21069.1Putative membrane protein. (396 aa)    
Predicted Functional Partners:
CDQ21067.1
Putative membrane-anchored protein.
       0.737
CDQ21068.1
Putative membrane-anchored protein.
       0.737
gerPA
Putative spore germination protein GerPA.
       0.689
gerPB
Putative spore germination protein GerPB.
       0.662
gerPC
Putative spore germination protein GerPC.
       0.520
gerPD
Putative spore germination protein GerPD.
       0.519
gerPE
Putative spore germination protein GerPE.
       0.519
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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