STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerPFPutative spore germination protein GerPF. (72 aa)    
Predicted Functional Partners:
gerPE
Putative spore germination protein GerPE.
  
  
 0.938
gerPD
Putative spore germination protein GerPD.
  
  
 0.929
gerPB
Putative spore germination protein GerPB.
  
  
 0.926
gerPC
Putative spore germination protein GerPC.
  
  
 0.914
gerPA
Putative spore germination protein GerPA.
  
  
 0.891
cotY
Spore coat protein Y.
   
  
 0.682
tgl
Protein-glutamine gamma-glutamyltransferase.
   
  
 0.622
cotE
Spore coat protein E.
   
  
 0.619
gerQ
Spore coat protein GerQ.
      
 0.614
spoIVA
Stage IV sporulation protein A.
      
 0.613
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.