STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lcfB_5Long-chain-fatty-acid--CoA ligase. (514 aa)    
Predicted Functional Partners:
fabD
Malonyl CoA-acyl carrier protein transacylase.
   
 0.861
fabF
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
 0.813
acpA
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.810
fadD
Long-chain-fatty-acid--CoA ligase.
  
  
 
0.804
mmgC_1
Acyl-CoA dehydrogenase.
   
 
  0.736
mmgC_2
Acyl-CoA dehydrogenase.
   
 
  0.736
acdA_2
Acyl-CoA dehydrogenase.
   
 
  0.736
acdA_3
Acyl-CoA dehydrogenase.
   
 
  0.736
ydbM
Putative acyl-CoA dehydrogenase YdbM.
   
 
  0.723
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
 
 0.710
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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