STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
CDQ21103.1Putative ABC-type exoprotein transport system, permease component. (404 aa)    
Predicted Functional Partners:
ecsA_2
ABC-type transporter ATP-binding protein EcsA.
 
  
 0.949
CDQ21102.1
EcsC protein family protein.
  
  
 0.809
CDQ21107.1
Gas vesicle protein.
 
     0.781
CDQ19261.1
Tetratricopeptide repeat protein.
  
     0.757
CDQ19507.1
Tetratricopeptide repeat protein.
  
     0.727
CDQ21018.1
Competence protein.
  
     0.723
CDQ18308.1
DNA methylase.
 
     0.717
CDQ18201.1
Hypothetical protein.
  
     0.706
dnaB
Replication initiation and membrane attachment protein.
  
    0.702
ezrA
Septation ring formation regulator EzrA.
  
   
 0.702
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.