STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trpPPutative tryptophan transport protein. (177 aa)    
Predicted Functional Partners:
CDQ21107.1
Gas vesicle protein.
 
     0.647
mtrB
Tryptophan RNA-binding attenuator protein; Required for transcription attenuation control in the Trp operon. This trans-acting factor seems to recognize a 10 bases nucleotide sequence in the Trp leader transcript causing transcription termination. Binds the leader RNA only in presence of L-tryptophan. Belongs to the MtrB family.
  
   
 0.625
CDQ19935.1
Hypothetical protein.
  
     0.621
CDQ21122.1
Hypothetical protein.
  
     0.612
pabA_1
Para-aminobenzoate synthase glutamine amidotransferase component II.
   
  
 0.602
pabA_2
Para-aminobenzoate synthase glutamine amidotransferase component II.
   
  
 0.602
CDQ19294.1
Hypothetical protein.
  
     0.568
CDQ19574.1
Hypothetical protein.
  
     0.555
CDQ21105.1
HIT-like protein.
       0.547
CDQ19702.1
Hypothetical protein.
  
     0.532
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.