STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ21107.1Gas vesicle protein. (135 aa)    
Predicted Functional Partners:
CDQ21103.1
Putative ABC-type exoprotein transport system, permease component.
 
     0.781
CDQ18201.1
Hypothetical protein.
  
    0.757
CDQ19261.1
Tetratricopeptide repeat protein.
  
    0.729
divIC
Cell division protein DivIC.
 
     0.723
mreD
Rod shape-determining protein MreD.
  
     0.705
CDQ19574.1
Hypothetical protein.
  
     0.691
CDQ19935.1
Hypothetical protein.
  
     0.690
CDQ19566.1
Hypothetical protein; Belongs to the UPF0346 family.
  
     0.681
CDQ20476.1
Flagellin N-methylase.
  
     0.666
rsbW
Serine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
 
    0.654
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.