STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gbuC_2Glycine betaine/carnitine transport binding protein GbuC precursor. (311 aa)    
Predicted Functional Partners:
gbuB
Glycine betaine/carnitine transport permease protein GbuB.
 
 0.999
gbuA
Glycine betaine/carnitine transport ATP-binding protein GbuA.
 
 0.997
gbuC_1
Glycine betaine/carnitine transport binding protein GbuC precursor.
  
  
 
0.957
opuAC
Glycine betaine-binding protein OpuAC precursor.
  
  
 
0.893
cheV
Chemotaxis protein CheV.
     
  0.712
opuCB
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
 
  0.642
CDQ21111.1
Putative transcriptional regulator.
 
     0.588
msmE_4
Multiple sugar-binding protein precursor.
     
  0.540
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
     
  0.540
ecfA2
Energy-coupling factor transporter ATP-binding protein EcfA2; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
     
  0.540
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.