STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gbuAGlycine betaine/carnitine transport ATP-binding protein GbuA. (400 aa)    
Predicted Functional Partners:
gbuC_2
Glycine betaine/carnitine transport binding protein GbuC precursor.
 
 0.999
gbuB
Glycine betaine/carnitine transport permease protein GbuB.
 0.999
gbuC_1
Glycine betaine/carnitine transport binding protein GbuC precursor.
 0.997
opuAC
Glycine betaine-binding protein OpuAC precursor.
 0.994
ecsA_3
ABC-type transporter ATP-binding protein EcsA.
 
     
0.848
modB
Molybdenum transport system permease protein ModB.
 
    
 0.762
opuCB
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
 
 0.756
ecsA_2
ABC-type transporter ATP-binding protein EcsA.
 
    
0.668
gsiD
Glutathione transport system permease protein GsiD.
 
      0.612
opuCA
Carnitine transport ATP-binding protein OpuCA.
  
 
 
0.596
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.