STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ21120.1ABC-2 family transporter protein. (417 aa)    
Predicted Functional Partners:
lptB
Lipopolysaccharide export system ATP-binding protein LptB.
 
 0.991
cheV
Chemotaxis protein CheV.
   
 
  0.765
CDQ21447.1
Hypothetical protein.
  
 
 0.699
CDQ21122.1
Hypothetical protein.
       0.541
CDQ21118.1
Hypothetical protein.
       0.540
yhaO
Putative metallophosphoesterase YhaO.
       0.540
CDQ19465.1
CAAX amino terminal protease self-immunity.
 
 
  0.521
CDQ20349.1
Exosortase E/protease, VPEID-CTERM system.
  
 
  0.454
ecsA_1
ABC-type transporter ATP-binding protein EcsA.
 
 0.440
skfE
SkfA peptide export ATP-binding protein SkfE.
 
 
 0.440
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.