STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ21125.1Putative membrane protein. (378 aa)    
Predicted Functional Partners:
CDQ21124.1
Hypothetical protein; Belongs to the UPF0342 family.
       0.693
CDQ21298.1
Hypothetical protein.
  
     0.689
CDQ19864.1
Hypothetical protein.
  
     0.655
CDQ20629.1
Hypothetical protein.
  
     0.638
CDQ20376.1
Hypothetical protein.
  
     0.601
CDQ19237.1
Hypothetical protein.
  
     0.527
CDQ20379.1
Hypothetical protein.
  
     0.488
CDQ19461.1
Hypothetical protein.
 
     0.448
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.