STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrpLeucine-rich protein. (297 aa)    
Predicted Functional Partners:
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
  
 0.667
CDQ20446.1
Bifunctional RNase H/acid phosphatase.
  
     0.605
CDQ18265.1
Hypothetical protein.
  
     0.541
CDQ18003.1
Hypothetical protein.
  
     0.519
ftsL
Cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family.
  
    0.514
nplT
Neopullulanase.
  
     0.510
CDQ19739.1
Flagellar hook-length control protein FliK.
  
     0.509
CDQ18081.1
Hypothetical protein.
  
     0.495
CDQ19935.1
Hypothetical protein.
  
     0.494
CDQ18850.1
DNA-directed RNA polymerase subunit beta.
  
     0.475
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.