STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ21129.1Hypothetical protein. (78 aa)    
Predicted Functional Partners:
CDQ19837.1
Hypothetical protein.
  
     0.647
CDQ21289.1
Hypothetical protein.
  
     0.565
CDQ19485.1
Hypothetical protein.
  
     0.555
CDQ19885.1
Sporulation lipoprotein, YhcN/YlaJ family.
  
     0.537
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.535
CDQ19468.1
CotJB protein.
  
     0.533
sasP-C
Small, acid-soluble spore protein C.
       0.526
gerBB_1
Spore germination protein B2.
  
     0.519
yjcA
Sporulation protein YjcA.
  
     0.516
gerBB_2
Spore germination protein B2.
  
     0.502
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.