STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vanYBD-alanyl-D-alanine carboxypeptidase. (273 aa)    
Predicted Functional Partners:
dacA
D-alanyl-D-alanine carboxypeptidase DacA precursor; Belongs to the peptidase S11 family.
     
 0.923
dacF
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
     
 0.923
dacB_1
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
     
 0.923
ponA_1
Penicillin-binding protein 1A/1B.
     
 0.918
ponA_2
Penicillin-binding protein 1A/1B.
     
 0.918
pbpF
Penicillin-binding protein F.
     
 0.918
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
    
 0.854
pbpB
Penicillin-binding protein B.
     
 0.830
ddlB
D-alanine--D-alanine ligase B; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.697
spoVD
Sporulation-specific penicillin-binding protein.
     
 0.618
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.