STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ21136.1NAD(P)H dehydrogenase (quinone); Belongs to the WrbA family. (202 aa)    
Predicted Functional Partners:
ubiE
Demethylmenaquinone methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
     
  0.885
qorB
Quinone oxidoreductase 2.
     
  0.708
ycgJ
Putative methyltransferase YcgJ.
     
  0.538
CDQ21197.1
PrkA family serine protein kinase.
   
    0.526
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
     
  0.466
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
    0.465
CDQ18297.1
Hypothetical protein.
   
    0.441
CDQ18470.1
Hypothetical protein.
   
    0.441
CDQ20320.1
Hypothetical protein.
   
    0.441
CDQ21137.1
Putative cation efflux system proteinc/MT2084; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.420
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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