Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
gerABSpore germination protein A2. (368 aa)    
Predicted Functional Partners:
CDQ21180.1
Germination protein, Ger(x)C family.
 
  
 0.951
gerAA_4
Spore germination protein A1.
 
  
 0.946
CDQ18404.1
Germination protein, Ger(x)C family.
 
  
 0.780
gerAC
Spore germination protein A3 precursor.
 
  
 0.765
gerBA_2
Spore germination protein B1.
 
  
 0.608
CDQ20509.1
Hypothetical protein.
  
     0.573
CDQ21177.1
Putative hydrophobic domain protein.
       0.541
CDQ21000.1
Hydroxyacylglutathione hydrolase.
  
     0.508
CDQ21384.1
Hypothetical protein.
  
     0.508
CDQ19207.1
FlgN protein.
  
     0.503
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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