STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ21213.1Carboxylate/amino acid/amine transporter. (114 aa)    
Predicted Functional Partners:
CDQ21208.1
Carboxylate/amino acid/amine transporter.
 
     0.976
CDQ18736.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.565
CDQ21211.1
transposase/IS protein.
       0.473
CDQ21212.1
Transposase.
       0.473
CDQ21214.1
Hypothetical protein.
       0.454
ynfM
Inner membrane transport protein YnfM.
  
     0.428
CDQ18621.1
Putative peptidase.
  
  
  0.409
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.