STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ21226.1Phage major capsid protein, HK97 family. (513 aa)    
Predicted Functional Partners:
CDQ21227.1
Hypothetical protein.
       0.773
CDQ17968.1
Hypothetical protein.
  
     0.736
CDQ17969.1
PD-(D/E)XK nuclease superfamily protein.
  
     0.736
CDQ17960.1
VRR-NUC domain protein.
  
     0.735
CDQ17959.1
DNA methylase.
  
     0.725
polA_1
DNA polymerase I, thermostable.
  
     0.725
CDQ21709.1
Phage tail tape measure protein, TP901 family, core region.
 
   
 0.721
CDQ17961.1
Putative P-loop ATPase.
 
     0.603
CDQ20860.1
Hypothetical protein.
  
  
 0.546
CDQ21225.1
Hypothetical protein.
       0.526
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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