Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dnaA_3Chromosomal replication initiator protein DnaA. (254 aa)    
Predicted Functional Partners:
CDQ21230.1
Transposase.
 
 
   0.961
CDQ20261.1
Transposase.
 
 
   0.819
CDQ20831.1
Transposase.
 
 
   0.819
CDQ21220.1
Transposase.
 
 
   0.819
CDQ21265.1
Transposase.
 
 
   0.819
CDQ20724.1
Transposase.
 
 
   0.814
CDQ20262.1
transposase/IS protein.
  
 
  
0.549
CDQ20830.1
transposase/IS protein.
  
 
  
0.549
CDQ21219.1
transposase/IS protein.
  
 
  
0.549
CDQ21264.1
transposase/IS protein.
  
 
  
0.549
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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