STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ21242.1Putative hydrolase. (174 aa)    
Predicted Functional Partners:
dhbC
Isochorismate synthase DhbC; Catalyzes the conversion of chorismate to isochorismate.
  
 
 0.742
nadD
Putative nicotinate-nucleotide adenylyltransferase.
    
 0.626
pncB2
Nicotinate phosphoribosyltransferase pncB2; Belongs to the NAPRTase family.
  
 
 0.620
CDQ18500.1
3-demethylubiquinone-9 3-methyltransferase.
   
    0.567
CDQ21249.1
3-demethylubiquinone-9 3-methyltransferase.
   
    0.567
pabB
Para-aminobenzoate synthase component 1.
  
 
  0.558
nnr
Nicotinamide nucleotide repair protein; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
   
    0.556
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
   
 
  0.533
CDQ21243.1
Hypothetical protein.
       0.528
cobB
NAD-dependent protein deacetylase.
  
 0.493
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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