STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO01387.1Predicted arabinose efflux permease, MFS family. (424 aa)    
Predicted Functional Partners:
SDO01355.1
Transcriptional regulatory protein, C terminal.
 
     0.895
SDO73718.1
DUF4097 and DUF4098 domain-containing protein YvlB.
  
     0.510
SDO51502.1
Catechol 2,3-dioxygenase.
  
     0.466
SDO58413.1
Homoserine dehydrogenase.
   
  0.465
SDN81306.1
Sugar phosphate permease.
 
   
0.464
fbp
Fructose-1,6-bisphosphatase-3.
       0.464
SDP17409.1
Hypothetical protein.
 
   
 0.456
SDO01324.1
Predicted SnoaL-like aldol condensation-catalyzing enzyme.
       0.451
SDP11901.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.434
SDN97310.1
Putative adhesin.
  
     0.414
Your Current Organism:
Halobacillus aidingensis
NCBI taxonomy Id: 240303
Other names: CGMCC 1.3703, H. aidingensis, Halobacillus aidingensis Liu et al. 2005, Halobacillus sp. AD-6, JCM 12771, strain AD-6
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