Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDN74995.1 | SDO48080.1 | SAMN05421677_10136 | SAMN05421677_105154 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase /chorismate mutase. | Shikimate kinase. | 0.953 |
SDN74995.1 | SDO94140.1 | SAMN05421677_10136 | SAMN05421677_109128 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase /chorismate mutase. | Prephenate dehydrogenase. | 0.990 |
SDN74995.1 | SDP58066.1 | SAMN05421677_10136 | SAMN05421677_1238 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase /chorismate mutase. | Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase. | 0.961 |
SDN74995.1 | aroA | SAMN05421677_10136 | SAMN05421677_109127 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase /chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.998 |
SDN74995.1 | aroB | SAMN05421677_10136 | SAMN05421677_109131 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase /chorismate mutase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.996 |
SDN74995.1 | aroE | SAMN05421677_10136 | SAMN05421677_12262 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase /chorismate mutase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.964 |
SDN74995.1 | aroQ | SAMN05421677_10136 | SAMN05421677_10595 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase /chorismate mutase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.792 |
SDN74995.1 | pheA | SAMN05421677_10136 | SAMN05421677_11050 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase /chorismate mutase. | Prephenate dehydratase. | 0.994 |
SDO48049.1 | SDO48080.1 | SAMN05421677_105153 | SAMN05421677_105154 | Arginine utilization protein RocB. | Shikimate kinase. | 0.636 |
SDO48080.1 | SDN74995.1 | SAMN05421677_105154 | SAMN05421677_10136 | Shikimate kinase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase /chorismate mutase. | 0.953 |
SDO48080.1 | SDO48049.1 | SAMN05421677_105154 | SAMN05421677_105153 | Shikimate kinase. | Arginine utilization protein RocB. | 0.636 |
SDO48080.1 | SDO94140.1 | SAMN05421677_105154 | SAMN05421677_109128 | Shikimate kinase. | Prephenate dehydrogenase. | 0.665 |
SDO48080.1 | SDP58066.1 | SAMN05421677_105154 | SAMN05421677_1238 | Shikimate kinase. | Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase. | 0.665 |
SDO48080.1 | aroA | SAMN05421677_105154 | SAMN05421677_109127 | Shikimate kinase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.803 |
SDO48080.1 | aroB | SAMN05421677_105154 | SAMN05421677_109131 | Shikimate kinase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.903 |
SDO48080.1 | aroE | SAMN05421677_105154 | SAMN05421677_12262 | Shikimate kinase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.630 |
SDO48080.1 | aroQ | SAMN05421677_105154 | SAMN05421677_10595 | Shikimate kinase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.627 |
SDO48080.1 | coaD | SAMN05421677_105154 | SAMN05421677_11179 | Shikimate kinase. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.615 |
SDO48080.1 | pheA | SAMN05421677_105154 | SAMN05421677_11050 | Shikimate kinase. | Prephenate dehydratase. | 0.627 |
SDO94140.1 | SDN74995.1 | SAMN05421677_109128 | SAMN05421677_10136 | Prephenate dehydrogenase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase /chorismate mutase. | 0.990 |
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