STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO79985.1Hypothetical protein. (55 aa)    
Predicted Functional Partners:
SDO80025.1
Hypothetical protein.
       0.773
SDO79943.1
Phage uncharacterized protein TIGR01671.
       0.741
SDO79860.1
Protein of unknown function.
       0.673
SDO79900.1
Hypothetical protein.
       0.673
SDO80067.1
Hypothetical protein.
       0.576
SDO80101.1
LexA DNA binding domain-containing protein.
       0.576
SDO79794.1
Hypothetical protein.
       0.438
SDO80187.1
Hypothetical protein.
       0.413
SDO80223.1
Hypothetical protein.
       0.413
SDO79750.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.412
Your Current Organism:
Halobacillus aidingensis
NCBI taxonomy Id: 240303
Other names: CGMCC 1.3703, H. aidingensis, Halobacillus aidingensis Liu et al. 2005, Halobacillus sp. AD-6, JCM 12771, strain AD-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.