STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO98783.1Uncharacterized membrane protein YcaP, DUF421 family. (230 aa)    
Predicted Functional Partners:
SDP28287.1
Uncharacterized membrane protein YcaP, DUF421 family.
  
     0.743
SDO98827.1
Na+/H+ antiporter NhaD.
       0.731
SDP50329.1
Sporulation protein YunB.
  
     0.626
SDP45748.1
Stage V sporulation protein AC.
 
    0.603
SDP45688.1
Stage V sporulation protein AE.
 
    0.598
SDO98864.1
Putative membrane protein, TIGR04086 family.
       0.559
SDO94609.1
Stage IV sporulation protein A.
  
     0.539
SDP45721.1
Stage V sporulation protein AD.
 
  
 0.523
SDO36390.1
Spore germination protein KA.
 
     0.507
SDP07846.1
RNA polymerase sporulation-specific sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.500
Your Current Organism:
Halobacillus aidingensis
NCBI taxonomy Id: 240303
Other names: CGMCC 1.3703, H. aidingensis, Halobacillus aidingensis Liu et al. 2005, Halobacillus sp. AD-6, JCM 12771, strain AD-6
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