STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANZ64012.1Flavodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)    
Predicted Functional Partners:
ANZ63406.1
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.723
recX
Hypothetical protein; Modulates RecA activity; Belongs to the RecX family.
   
   0.606
ANZ63975.1
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.592
ANZ62876.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
rpoE
DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
     0.500
ANZ64058.1
Initiation-control protein; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
     0.476
ANZ63899.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.457
ANZ63871.1
OxaA precursor; Involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.450
ANZ63058.1
Class A sortase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.444
yidC
Hypothetical protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily.
  
     0.430
Your Current Organism:
Lactobacillus paracollinoides
NCBI taxonomy Id: 240427
Other names: DSM 15502, JCM 11969, L. paracollinoides, Lactobacillus paracollinoides Suzuki et al. 2004, Lactobacillus pastorianus, Lactobacillus sp. DSM 20197, strain LA2
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