STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYR62_08285Transposase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)    
Predicted Functional Partners:
ANZ64074.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ANZ63046.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.759
ANZ62994.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     0.757
ANZ63173.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     0.757
ANZ62993.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.637
ANZ63172.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.637
rplL
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
       0.435
Your Current Organism:
Lactobacillus paracollinoides
NCBI taxonomy Id: 240427
Other names: DSM 15502, JCM 11969, L. paracollinoides, Lactobacillus paracollinoides Suzuki et al. 2004, Lactobacillus pastorianus, Lactobacillus sp. DSM 20197, strain LA2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.