STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB33259.1Chemotaxis protein MotB. (275 aa)    
Predicted Functional Partners:
SKB36138.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
  
 0.970
SKB48292.1
Chemotaxis protein MotB.
  
  
 
0.796
SKB50471.1
Outer membrane protein OmpA.
  
  0.781
SKB61718.1
Chemotaxis protein MotB.
  
  
 
0.773
SKB52012.1
PAS domain S-box-containing protein.
  
  
 0.704
SKB77971.1
Peptidoglycan-associated lipoprotein.
  
 0.612
SKB74771.1
Lipid A 3-O-deacylase (PagL).
  
  
 0.573
SKB32442.1
Outer membrane protein OmpA.
  
 
0.568
SKB81504.1
Outer membrane protein OmpA.
   
 0.555
SKB33271.1
Hypothetical protein.
       0.486
Your Current Organism:
Salegentibacter holothuriorum
NCBI taxonomy Id: 241145
Other names: DSM 23405, KMM 3524, LMG 21968, LMG:21968, NBRC 100249, S. holothuriorum, Salegentibacter holothuriorum Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.