STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB33403.1Hypothetical protein. (291 aa)    
Predicted Functional Partners:
SKB33414.1
Ligand-gated ion channel.
       0.541
SKB33431.1
3D (Asp-Asp-Asp) domain-containing protein.
       0.541
SKB33462.1
Hypothetical protein.
  
 
  0.464
SKB36839.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.464
SKB30900.1
Hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.441
SKB60336.1
Glutamine amidotransferase domain-containing protein.
  
     0.434
SKB37547.1
Hypothetical protein; Manually curated.
  
     0.431
SKB53004.1
Nicotinamidase/pyrazinamidase.
   
 
  0.423
SKB60420.1
Methyltransferase domain-containing protein.
  
    0.413
SKB39869.1
D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.403
Your Current Organism:
Salegentibacter holothuriorum
NCBI taxonomy Id: 241145
Other names: DSM 23405, KMM 3524, LMG 21968, LMG:21968, NBRC 100249, S. holothuriorum, Salegentibacter holothuriorum Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.