STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB39407.1Hypothetical protein. (282 aa)    
Predicted Functional Partners:
SKB39416.1
Protein of unknown function.
       0.793
SKB39429.1
Hypothetical protein.
       0.793
SKB39439.1
Hypothetical protein.
       0.793
SKB39391.1
Type I restriction enzyme, R subunit.
       0.474
SKB39399.1
Hypothetical protein.
       0.474
SKB39343.1
GIY-YIG catalytic domain-containing protein.
       0.450
SKB39373.1
Type I restriction enzyme, S subunit.
       0.450
SKB39381.1
Type I restriction enzyme M protein.
       0.450
SKB39251.1
KAP family P-loop domain-containing protein.
       0.404
SKB39448.1
RES domain-containing protein.
       0.401
Your Current Organism:
Salegentibacter holothuriorum
NCBI taxonomy Id: 241145
Other names: DSM 23405, KMM 3524, LMG 21968, LMG:21968, NBRC 100249, S. holothuriorum, Salegentibacter holothuriorum Nedashkovskaya et al. 2004
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.