Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKB33088.1 | SKB48711.1 | SAMN05660776_0456 | SAMN05660776_1348 | Acyl carrier protein. | seryl-tRNA synthetase. | 0.829 |
SKB33088.1 | thrS | SAMN05660776_0456 | SAMN05660776_2280 | Acyl carrier protein. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.480 |
SKB48676.1 | SKB48711.1 | SAMN05660776_1346 | SAMN05660776_1348 | Protein of unknown function. | seryl-tRNA synthetase. | 0.779 |
SKB48676.1 | rsmA | SAMN05660776_1346 | SAMN05660776_1345 | Protein of unknown function. | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.836 |
SKB48711.1 | SKB33088.1 | SAMN05660776_1348 | SAMN05660776_0456 | seryl-tRNA synthetase. | Acyl carrier protein. | 0.829 |
SKB48711.1 | SKB48676.1 | SAMN05660776_1348 | SAMN05660776_1346 | seryl-tRNA synthetase. | Protein of unknown function. | 0.779 |
SKB48711.1 | acpP | SAMN05660776_1348 | SAMN05660776_0391 | seryl-tRNA synthetase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.829 |
SKB48711.1 | acpP-2 | SAMN05660776_1348 | SAMN05660776_1468 | seryl-tRNA synthetase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.829 |
SKB48711.1 | alaS | SAMN05660776_1348 | SAMN05660776_0074 | seryl-tRNA synthetase. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.784 |
SKB48711.1 | lysS | SAMN05660776_1348 | SAMN05660776_1070 | seryl-tRNA synthetase. | lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.809 |
SKB48711.1 | pheS | SAMN05660776_1348 | SAMN05660776_1430 | seryl-tRNA synthetase. | phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.804 |
SKB48711.1 | rsmA | SAMN05660776_1348 | SAMN05660776_1345 | seryl-tRNA synthetase. | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.945 |
SKB48711.1 | thrS | SAMN05660776_1348 | SAMN05660776_2280 | seryl-tRNA synthetase. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.791 |
SKB48711.1 | valS | SAMN05660776_1348 | SAMN05660776_2418 | seryl-tRNA synthetase. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.814 |
acpP | SKB48711.1 | SAMN05660776_0391 | SAMN05660776_1348 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | seryl-tRNA synthetase. | 0.829 |
acpP | thrS | SAMN05660776_0391 | SAMN05660776_2280 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.480 |
acpP-2 | SKB48711.1 | SAMN05660776_1468 | SAMN05660776_1348 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | seryl-tRNA synthetase. | 0.829 |
acpP-2 | thrS | SAMN05660776_1468 | SAMN05660776_2280 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.480 |
alaS | SKB48711.1 | SAMN05660776_0074 | SAMN05660776_1348 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | seryl-tRNA synthetase. | 0.784 |
alaS | lysS | SAMN05660776_0074 | SAMN05660776_1070 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.669 |
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