STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB58746.1D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4). (445 aa)    
Predicted Functional Partners:
SKB32690.1
Beta-glucosidase.
    
 0.822
SKB51683.1
Beta-glucosidase.
    
 0.822
SKB58734.1
Muramoyltetrapeptide carboxypeptidase.
 
   
 0.804
SKB58792.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.794
SKB35375.1
Hypothetical protein.
   
   0.785
SKB58777.1
Starch-binding associating with outer membrane.
 
     0.681
SKB58762.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.665
SKB58806.1
Zinc carboxypeptidase.
 
     0.656
SKB51545.1
Uncharacterized lipoprotein YddW, UPF0748 family.
 
     0.565
SKB51669.1
Predicted acyltransferase.
  
     0.514
Your Current Organism:
Salegentibacter holothuriorum
NCBI taxonomy Id: 241145
Other names: DSM 23405, KMM 3524, LMG 21968, LMG:21968, NBRC 100249, S. holothuriorum, Salegentibacter holothuriorum Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.