STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB60231.1Hypothetical protein. (279 aa)    
Predicted Functional Partners:
SKB60240.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 
0.847
SKB60246.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing); Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
    
  0.818
SKB60262.1
Glycosyl transferases group 1.
  
    0.781
SKB60253.1
Hypothetical protein.
       0.773
SKB60202.1
Colanic acid/amylovoran biosynthesis glycosyltransferase.
 
  
  0.731
SKB36743.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  
  0.727
SKB83525.1
Trehalose 6-phosphate synthase/phosphatase.
  
 
 0.711
SKB60194.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 
0.644
SKB60285.1
Glycosyltransferase like family 2.
 
     0.561
SKB59497.1
Tetratricopeptide repeat-containing protein.
  
 
 0.506
Your Current Organism:
Salegentibacter holothuriorum
NCBI taxonomy Id: 241145
Other names: DSM 23405, KMM 3524, LMG 21968, LMG:21968, NBRC 100249, S. holothuriorum, Salegentibacter holothuriorum Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.