STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB63109.1Periplasmic chaperone for outer membrane proteins Skp. (174 aa)    
Predicted Functional Partners:
SKB63119.1
Hypothetical protein.
       0.592
SKB63128.1
Periplasmic chaperone for outer membrane proteins SurA.
 
  
 0.583
SKB81504.1
Outer membrane protein OmpA.
 
 
 0.567
SKB78117.1
Hypothetical protein.
  
   0.561
SKB77971.1
Peptidoglycan-associated lipoprotein.
 
 
 0.549
SKB35844.1
Hypothetical protein.
  
     0.534
SKB40589.1
Hypothetical protein.
  
     0.521
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
  
    0.514
SKB31500.1
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
  
    0.514
SKB46552.1
Beta-barrel assembly machine subunit BamA.
 
    0.513
Your Current Organism:
Salegentibacter holothuriorum
NCBI taxonomy Id: 241145
Other names: DSM 23405, KMM 3524, LMG 21968, LMG:21968, NBRC 100249, S. holothuriorum, Salegentibacter holothuriorum Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.