STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB70123.1Protein of unknown function. (179 aa)    
Predicted Functional Partners:
SKB70089.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
       0.837
SKB70116.1
Uncharacterized OsmC-related protein.
 
     0.830
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
       0.639
SKB74761.1
Putative auto-transporter adhesin, head GIN domain.
  
     0.589
SKB74771.1
Lipid A 3-O-deacylase (PagL).
  
     0.511
SKB66208.1
Hypothetical protein.
  
     0.460
SKB77825.1
Hypothetical protein; Manually curated.
  
     0.441
SKB33982.1
Hypothetical protein.
  
     0.440
SKB35551.1
Hypothetical protein.
  
     0.434
SKB85782.1
Hypothetical protein.
  
     0.426
Your Current Organism:
Salegentibacter holothuriorum
NCBI taxonomy Id: 241145
Other names: DSM 23405, KMM 3524, LMG 21968, LMG:21968, NBRC 100249, S. holothuriorum, Salegentibacter holothuriorum Nedashkovskaya et al. 2004
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.