STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB71408.1MFS transporter, FHS family, L-fucose permease. (436 aa)    
Predicted Functional Partners:
SKB71427.1
L-rhamnose mutarotase.
 
  
 0.951
SKB71394.1
L-fucose dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.839
SKB71337.1
L-fuconolactonase.
 
  
 0.794
SKB71447.1
L-lactate dehydrogenase (cytochrome).
       0.777
SKB71348.1
alpha-L-fucosidase 2.
 
     0.707
SKB71288.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
    0.664
SKB71259.1
Altronate hydrolase.
 
     0.660
SKB71324.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
     0.659
SKB71381.1
alpha-L-fucosidase.
 
     0.657
SKB71369.1
Arylsulfatase A.
       0.603
Your Current Organism:
Salegentibacter holothuriorum
NCBI taxonomy Id: 241145
Other names: DSM 23405, KMM 3524, LMG 21968, LMG:21968, NBRC 100249, S. holothuriorum, Salegentibacter holothuriorum Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.