STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB75709.1Helix-turn-helix. (87 aa)    
Predicted Functional Partners:
SKB75720.1
Serine/threonine-protein kinase HipA.
   
 
 0.913
SKB39160.1
Serine/threonine-protein kinase HipA.
   
 
 0.612
SKB39171.1
Serine/threonine-protein kinase HipA.
   
 
 0.612
SKB75696.1
Hypothetical protein.
       0.528
cas1
CRISP-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
     
 0.456
SKB75734.1
CRISPR-associated endonuclease Csn1.
       0.430
SKB75744.1
CRISPR-associated endonuclease Csn1.
       0.430
Your Current Organism:
Salegentibacter holothuriorum
NCBI taxonomy Id: 241145
Other names: DSM 23405, KMM 3524, LMG 21968, LMG:21968, NBRC 100249, S. holothuriorum, Salegentibacter holothuriorum Nedashkovskaya et al. 2004
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.