STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB77825.1Hypothetical protein; Manually curated. (87 aa)    
Predicted Functional Partners:
SKB77840.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.863
SKB66349.1
Hypothetical protein.
  
     0.748
SKB66359.1
Hypothetical protein.
  
     0.743
SKB33982.1
Hypothetical protein.
  
     0.738
SKB68069.1
HPt (histidine-containing phosphotransfer) domain-containing protein.
  
     0.715
SKB58382.1
Hypothetical protein.
  
     0.706
SKB48188.1
Hypothetical protein.
  
     0.657
SKB34971.1
Protein of unknown function.
  
     0.617
SKB67179.1
G/U mismatch-specific uracil-DNA glycosylase.
  
     0.617
SKB54493.1
Protein of unknown function; Non-canonical start codon; manually curated.
  
     0.614
Your Current Organism:
Salegentibacter holothuriorum
NCBI taxonomy Id: 241145
Other names: DSM 23405, KMM 3524, LMG 21968, LMG:21968, NBRC 100249, S. holothuriorum, Salegentibacter holothuriorum Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.