STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB80109.1DoxX protein. (364 aa)    
Predicted Functional Partners:
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
      0.944
SKB80095.1
Protein of unknown function.
 
     0.881
SKB52051.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.747
SKB47118.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
   
 
  0.737
SKB54480.1
uroporphyrinogen-III synthase.
  
     0.697
SKB66467.1
Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.696
SKB45545.1
Gliding motility-associated protein GldL.
  
     0.686
SKB58455.1
Gliding motility-associated lipoprotein GldB.
  
     0.682
SKB34008.1
Protein of unknown function.
  
     0.661
SKB45094.1
Rod shape-determining protein MreD; Manually curated.
  
     0.651
Your Current Organism:
Salegentibacter holothuriorum
NCBI taxonomy Id: 241145
Other names: DSM 23405, KMM 3524, LMG 21968, LMG:21968, NBRC 100249, S. holothuriorum, Salegentibacter holothuriorum Nedashkovskaya et al. 2004
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.