STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVFBDipicolinate synthase subunit B; Involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)    
Predicted Functional Partners:
AMW98538.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.982
AMW98537.1
Sporulation protein, YlmC/YmxH family; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.820
AMW98855.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.792
spoVAC
Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.760
AMW98599.1
Stage V sporulation protein AF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.753
sigE
Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.747
spoIVA
Stage IV sporulation protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.746
AMX00914.1
Stage III sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.746
AMW98220.1
Stage V sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.737
AMX00680.1
Stage V sporulation protein T; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.731
Your Current Organism:
Rummeliibacillus stabekisii
NCBI taxonomy Id: 241244
Other names: Bacillus sp. NBRC 12622, NBRC 104870, NRRL B-51320, R. stabekisii, Rummeliibacillus stabekisii Vaishampayan et al. 2009, low G+C Gram-positive bacterium M32, strain KSC-SF6g
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